University of Minnesota
University of Minnesota
College of Biological Sciences
http://www.cbs.umn.edu/

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Plant host and plant diversity effects on rhizosphere microbial community composition, diversity, structure, and function. - Experiment 284


Streptomyces pathogen suppressive activity in plant communities varying in diversity

Years Available: 2010

Principle Investigators

Kinkel, Linda

View All Experiment and Dataset Methods

ATTRIBUTES

FieldNameDefinitionUnitCode
1Sample YearYear soil sample was collected
2SampleSample name (Plant, plot, and diversity trt)
3Sample SitePhysical site of soil sample
4Plot IDThe plot number in Big Bio the sample was collected from
5PlantThe nearest host plant species the soil sample was collected next to.Ag=Andropogon gerardii;Lp=Lupinus perennis;Ss=Schizachyrium scoparium;Lc=Lespedeza capitata
6Plot DiversityNumber of species planted in plotnumber
7LogBactThe Log10 transformation of the (all) mean bacterial density (Avg_BactCFU)dimensionless
8LogStrepThe Log10 transformation of the mean Streptomyces density (Avg_StrepCFU)dimensionless
9LogInhibThe Log10 transformation of the inhibitory Streptomyces density (Avg_InhibCFU)dimensionless
10Avg_BactCFUThe mean bacterial density per sample (Colony Forming Units (CFU) per gram of soil)CFU/g
11Avg_StrepCFUThe mean Streptomyces density per sample (Colony Forming Units (CFU) per gram of soil)CFU/g
12Avg_InhibCFUThe mean density of inhibitory Streptomyces per sample (Colony Forming Units (CFU) per gram of soil)CFU/g
13Avg_KZThe mean size of the inhibition zone produced by a Streptomyces colony in response to the overlay isolate (4-21, 1324.2, or 87; TOTAL, mean of all response millimeter
14Avg_PropInhibThe mean proportion of the inhibitory Streptomyces density of the total Streptomyces density; mean of all response isolates per sample (TOTAL)dimensionless
1587_BactCFUThe mean bacterial density of plates overlaid with isolate 87 (response isolate), per sampleCFU/g
1687_StrepCFUThe mean Streptomyces density of plates overlaid with isolate 87 (response isolate), per sampleCFU/g
1787_InhibCFUThe mean density of plates overlaid with isolate 87 (response isolate) of inhibitory Streptomyces per sampleCFU/g
1887_KZThe mean size of the inhibition zone produced by a Streptomyces colony in response to the overlay isolate 87 per samplemillimeter
1987_PropInhibThe mean proportion of the inhibitory Streptomyces density of the total Streptomyces density per sample of plates overlaid with isolate 87dimensionless
204-21_BactCFUThe mean bacterial density of plates overlaid with isolate 4-21 (response isolate), per sampleCFU/g
214-21_StrepCFUThe mean Streptomyces density of plates overlaid with isolate 4-21 (response isolate), per sampleCFU/g
224-21_InhibCFUThe mean density of plates overlaid with isolate 4-21 (response isolate) of inhibitory Streptomyces per sampleCFU/g
234-21_KZThe mean size of the inhibition zone produced by a Streptomyces colony in response to the overlay isolate 4-21 per samplemillimeter
244-21_PropInhibThe mean proportion of the inhibitory Streptomyces density of the total Streptomyces density per sample of plates overlaid with isolate 4-21dimensionless
251324-2 BactCFUThe mean bacterial density of plates overlaid with isolate 1324-2 (response isolate), per sampleCFU/g
261324-2_StrepCFUThe mean Streptomyces density of plates overlaid with isolate 1324-2 (response isolate), per sampleCFU/g
271324-2_InhibCFUThe mean density of plates overlaid with isolate 1324-2 (response isolate) of inhibitory Streptomyces per sampleCFU/g
281324-2_KZThe mean size of the inhibition zone produced by a Streptomyces colony in response to the overlay isolate 1324-2 per samplemillimeter
291324-2_PropInhibThe mean proportion of the inhibitory Streptomyces density of the total Streptomyces density per sample of plates overlaid with isolate 1324-2dimensionless
 

SAMPLE DATASET

Sample YearSampleSample SitePlot IDPlantPlot DiversityLogBactLogStrepLogInhibAvg_BactCFUAvg_StrepCFUAvg_InhibCFUAvg_KZAvg_PropInhib87_BactCFU87_StrepCFU87_InhibCFU87_KZ87_PropInhib4-21_BactCFU4-21_StrepCFU4-21_InhibCFU4-21_KZ4-21_PropInhib1324-2 BactCFU1324-2_StrepCFU1324-2_InhibCFU1324-2_KZ1324-2_PropInhib
2009Ag146a08Big Biodiversity Field 146Ag86.11246.07145.5321129542011785913405013.440.27157270613480347489084.460.55116027110763961677503.030.16115328211113441048442.820.10
2009Ag283a08Big Biodiversity Field 283Ag86.15816.13985.7691143921713796045876092.350.43171173116861835876093.020.33148179713540566898021.850.52112412210985744854162.190.44
2009Ag292a08Big Biodiversity Field 292Ag86.47656.43855.7677299581627447705857743.040.22253556521589964769872.810.23306276229372386276153.560.21338912131380756527202.740.20
2009Lc057a08Big Biodiversity Field 57Lc86.50256.44115.8270318086427612256714232.070.24342425529710457805292.540.27281997524423005287452.000.21329836328703327049941.670.25
2009Lc146a08Big Biodiversity Field 146Lc85.83605.83005.47146854116760852960792.910.446294596084773287173.460.557973147973143636872.920.456294596224651958322.360.31
2009Lc206a08Big Biodiversity Field 206Lc86.28266.25725.7009191671918079105021972.480.26195856918832394268681.590.23188323917828004017584.260.20190834917576906779661.590.34
2009Lp012a08Big Biodiversity Field 12Lp86.30266.23435.7107200732117150795136382.040.30223166819128594605031.300.24198370515674814782152.190.31180658916648966021962.640.34
2009Lp206a08Big Biodiversity Field 206Lp86.37706.33085.6154238228121420294124672.180.20221668716438364732252.410.28244042723911263944122.080.16248972923911263697622.050.15
2009Lp292a08Big Biodiversity Field 292Lp86.28236.24035.5669191549517391803688912.020.22225840620807782283782.380.09160602314805525771641.970.38188205816562113011291.710.19
2009Ss012a08Big Biodiversity Field 12Ss86.31986.27565.6414208842118863164378952.700.24217263219200003789471.740.20240000022231585305264.200.25169263215157894042112.160.27
2009Ss057a08Big Biodiversity Field 57Ss86.22896.18825.7665169412315422365841802.380.39157728715422366659662.000.45171749014370845257622.380.38178759216473895608132.780.34
2009Ss283a08Big Biodiversity Field 283Ss86.27436.25745.6493188081418089874459873.120.25167919816040104260653.230.28189393918588663858022.900.21206930419640855260943.240.27
                             

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Plant host and plant diversity effects on rhizosphere microbial community composition, diversity, structure, and function.: Streptomyces pathogen suppressive activity in plant communities varying in diversity

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